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• Tutorial
  <big>( This tutorial predates Biocellion 1.2; for 1.2 and later releases, see the [[Getting Started|Tutorial Series]] )</big> ...tter when defining constants. In order, these constants will be set to 0, 1 and 2. Although you could use the integers directly in the code, this allo
  28 KB (4,780 words) - 18:08, 23 March 2017
• Yeast microfluidics
  ...st aging dynamics, and have recently published their work in Cell Reports [1]. However, improving the throughput and developing larger and more complex 1) Aging Yeast Cells Undergo a Sharp Entry into Senescence Unrelated to the L
  6 KB (930 words) - 02:49, 7 September 2014
• Avascular tumor
  [[File:tumor_cross_section.png|200px|thumb|right|Fig 1. Tumor cross section]]
  6 KB (925 words) - 04:50, 7 September 2014
• Getting Started
  ...://download.biocellion.com/download Download] page (updated for Biocellion 1.2 03/27/2017). ...a new user who wants to try out Biocellion, you may want to choose option 1. The VirtualBox Disk Image has all the necessary softwar and environment pr
  7 KB (1,029 words) - 00:04, 2 February 2019
• Building the First Model
  ...chapters of the Biocellion [http://biocellion.com/documentation/Biocellion-1.2.pdf manual] to get an overview now; then using it as a reference while wo ...from the tutorial. Interested users may want to read over the Biocellion 1.1 manual for explanations of all functions.
  14 KB (2,292 words) - 02:41, 10 November 2017
• Cell Growth and Cell Death
  ...math>k = </math> A_LINEAR_CELL_GROWTH_CONSTANT, such that, <math>Biomass(t+1) = k*Biomass(t)</math>. With the newBiomass value and global variable A_CEL ...math>tmp</math> is a uniformly randomly generated number between <math>[0, 1]</math>.
  7 KB (1,169 words) - 18:27, 5 October 2016
• Mechanical Interactions
  ...adhesion formula is applied: <math>F = -0.5 * (dist-R) * exp\{\frac{-1*(x-1.0)^2}{k}\}</math>, where <math>k</math> is A_CELL_ADHESION constant. The 'f
  2 KB (368 words) - 18:36, 5 October 2016
• Grid Molecular Concentration
  ...ctor of UPTAKE_PCT_INC_RATIO. CELL_MODEL_REAL_UPTAKE_PERCT may not exceed 1.0. ...the additional cell state, CELL_MODEL_REAL_ALIVE with the initial value of 1.0 (alive).
  8 KB (1,312 words) - 18:43, 5 October 2016
• Chemotaxis
  /* calculate the offset ([-1,0,1] in all dimensions) for each of the two neighbors */ fwdOffset[dim] = dim == fwdInt ? (fwdDir[fwdInt] > 0 ? 1 : -1) : 0;
  7 KB (1,007 words) - 05:45, 16 December 2016
• Boolean Networks
  ...esponding input (update) functions. Each gene takes on the value of either 1 or 0 (ON or OFF), and the state of the gene is the realization of inputs fr ...e File. If a gene doesn't contribute in updating of a state, leave it as '-1'.
  2 KB (414 words) - 04:02, 4 March 2017